Logo

Contents

  • Installation
  • Usage
  • Condition-agnostic studies
    • Example 1: STARmap V1C dataset
    • Example 2: MERFISH FC&S dataset
    • Example 3: Visium DLPFC dataset
    • Example 4: MERFISH WMB dataset
    • Example 5: Visium HD CRC dataset
  • Case-control studies
Harmonics
  • Condition-agnostic studies
  • View page source

Condition-agnostic studies

  • Example 1: STARmap V1C dataset
    • Run Harmonics on STARmap V1C dataset
    • Downstream Analyses on STARmap V1C dataset
  • Example 2: MERFISH FC&S dataset
    • Run Harmonics on MERFISH FCandS dataset
    • Downstream Analyses on MERFISH FC&S dataset
  • Example 3: Visium DLPFC dataset
    • Cell type deconvolution using STitch3D for DLPFC
    • Tutorial for Visium DLPFC dataset
  • Example 4: MERFISH WMB dataset
    • Tutorial for MERFISH WMB dataset
    • Tutorial for MERFISH WMB dataset (Using label transfer to reduce running time)
  • Example 5: Visium HD CRC dataset
    • Tutorial for Visium HD CRC dataset
Previous Next

© Copyright 2025, Yuyao Liu.

Built with Sphinx using a theme provided by Read the Docs.